Molecular Docking Studies on Eudesmane Sesquiterpenes as Potential Anti-leishmanial Agents

Authors

  • Taye Temitope Alawode Federal University Otuoke

Keywords:

Leishmaniasis, Eudesmane Sesquiterpenes, Docking, Drug-likeness

Abstract

 

Communication in Physical Sciences, 2024, 12(1): 012-019

Author: Taye Temitope Alawode

Received : 12 July 2024/Accepted 20 October 2024

DOI: https://dx.doi.org/10.4314/cps.v12i1.2 

In this study, potential inhibitors against Leishmania were identified by docking 30 bioactive compounds from the methanol extract of Solanum erianthum leaves with key Leishmania protein targets. Among the screened compounds, six demonstrated strong binding affinities, with docking scores ranging from −9.2 to −11.4 kcal/mol, particularly against enzymes like trypanothione reductase and arginase, which are crucial for Leishmania’s survival. Experimental validation using in vitro assays confirmed the inhibitory activity of the top three compounds, showing IC50 values between 10 to 25 µM. The findings suggest that compounds from Solanum erianthum have the potential to act as lead inhibitors for Leishmania proteins, especially with binding affinity values 30–50% higher than standard inhibitors. Further experimental tests, including enzyme inhibition assays and Leishmania-infected animal models, will be conducted to evaluate their in vivo efficacy. Lead optimization, including structural modifications, is recommended to enhance potency, with a focus on improving pharmacokinetic properties. Visual representations, including protein-ligand interaction diagrams, demonstrated strong hydrogen bonding and hydrophobic interactions, which are critical for the compounds' inhibitory effects.

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Author Biography

Taye Temitope Alawode, Federal University Otuoke

Department of Chemistry

References

Cervantes-Ceballos, L., Mercado-Camargo, J., del Olmo-Fernández, E., Serrano-García, M. L., Robledo, S. M., & Gómez-Estrada, H. (2023).

Antileishmanial Activity and In Silico Molecular Docking Studies of Malachraalceifolia Jacq. Fractionsagainst Leishmania mexicanaAmastigotes. Tropical Medicone and Infectious Disease, 8, pp. 115. https://doi.org/10.3390/tropicalmed8020115.

Chawla, B. &Madhubala R. (2010). Drug targets in Leishmania. Journal of Parasitic Diseases, 34, 1, pp. 1–13.

Cheng, F., Li, W., Zhou, Y., Shen, J., Wu, Z., Liu, G., Lee, P.W., &Tang Y. (2012). admetSAR: a comprehensive source and free tool for assessment of chemical ADMET properties. Journal of Chemical Information and Modeling,26, 52(11), pp. 3099-105. doi: 10.1021/ci300367a. Erratum in: Journal of Chemical Information and Modeling, 59, 11, pp. 4959. doi: 10.1021/acs.jcim.9b00969.

Daina, A., Michielin, O. & Zoete, V. (2017). SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules. Scientific Reports, 7, 42717 https://doi.org/10.1038/srep42717

Lipinski, C. A. (2004). Lead- and drug-like compounds: the rule-of-five revolution. Drug Discovery Today: Technologies, 1, 4, pp. 337–341.

Madusanka, R.K., Silva, H. & Karunaweera, N.D. (2022). Treatment of cutaneous leishmaniasis and insights into species-specific responses: A Narrative Review. Infectious Diseases and Therapeutics, 11, 2, pp. 695–711.

Mohan, S., Revill, P., Malvolti, S., Malhame, M., Sculpher, M. & Kaye, P. M. (2022) Estimating the global demand curve for a leishmaniasis vaccine: A generalisable approach based on global burden of disease estimates. PLoS Neglected Tropical Diseases, 16, 6, e0010471. doi:10.1371/journal.pntd.0010471.

Röhrig, U. F., Goullieux ,M., Bugnon, M. & Zoete, V. (2023). Attracting Cavities 2.0: improving the flexibility and robustness for small-molecule docking. Journal of Chemical Information and Modeling, 63, 12, pp. 3925–3940, DOI: 10.1021/acs.jcim.3c00054

Seo, M., Crochet,R.B., & Lee, Y. (2014). Chapter 14 - Targeting Altered Metabolism Emerging Cancer Therapeutic Strategies, Editor(s):

Stephen Neidle, Cancer Drug Design and Discovery (Second Edition), Academic Press, pp. 427-448. https://doi.org/10.1016/B978-0-12-396521-9.00014-0

Torres-Guerrero, E., Quintanilla-Cedillo, M. R., Ruiz-Esmenjaud, J. & Arenas, R. (2017). Leishmaniasis: a review.F1000Research), 750. https://doi.org/10.12688/f1000research.11120.1.

Turner, N. J. (2000). Applications of transketolases in organic synthesis,Current Opinion in Biotechnology, 11, 6, pp. 527-531, https://doi.org/10.1016/S0958-1669(00)00140-3.

Wamai, R. G., Kahn, J., McGloin J., & Ziaggi, G. (2020). Visceral leishmaniasis: a global overview. Journal of Global Health Science, 2, 1, e3. English. https://doi.org/10.35500/jghs.2020.2.e3.

Wang, T., Sun, J., & Zhao, Q. (2023). Investigating cardiotoxicity related with hERG channel blockers using molecular fingerprints and graph attention mechanism. Computers in Biology Medicine, 153, 106464, doi: 10.1016/j.compbiomed.2022.106464.

World Health Organization (2023). Leishmaniasis. https://www.who.int/news-room/fact-sheets/detail/leishmaniasis. (Accessed online: 23rd August, 2024).

Wu, G., Zhao, H., Peng, C., Liu, F.& Xiong L. (2024). Eudesmane-type sesquiterpenoids: Structural diversity and biological activity, Heliyon, 10, 15, e35270, https://doi.org/10.1016/j.heliyon.2024.e35270.

Zoete, V., Schuepbach, T., Bovigny, C., Chaskar, P., Daina, A., Röhrig, U. F. & Michielin, O. (2016). Attracting cavities for docking. replacing the rough energy landscape of the protein by a smooth attracting landscape. Journal of Computational Chemistry, 37, 4, pp. 437–447. doi: 10.1002/jcc.24249.

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Published

2024-11-15